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| podospora |
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Alignment results
Figure 1: Sequence alignment.
Legend:
Similar residues are colored as the most conserved one (according to BLOSUM62).
Average BLOSUM62 score: Max: 3.0 Mid: 1.5 Low: 0.5
Legend:
Similar residues are colored as the most conserved one (according to BLOSUM62).
Average BLOSUM62 score: Max: 3.0 Mid: 1.5 Low: 0.5
Input:
Outputs:
Alignment in Fasta format Alignment in Phylip format Alignment in Clustal formatTaxon names association table
| Output Taxon Name | Original (Long) Taxon Name | |
|---|---|---|
| Ch.g.CBS_1 | Chaetomium globosum_CBS 160.62 | (PHYLIP, Clustal, HTML) |
| Chaetomium_globosum_CBS_160.62 | Chaetomium globosum_CBS 160.62 | (Guide tree, FASTA) |
| Cl.buu.UOA | Cladorrhinum bulbillosum_UOA/HCPF 11454 | (Clustal, PHYLIP, HTML) |
| Cl.h.CBS_1 | Cladorrhinum hyalocarpum_CBS 102198 | (HTML, Clustal, PHYLIP) |
| Cladorrhinum_bulbillosum_UOA/HCPF_11454 | Cladorrhinum bulbillosum_UOA/HCPF 11454 | (Guide tree, FASTA) |
| Cladorrhinum_hyalocarpum_CBS_102198 | Cladorrhinum hyalocarpum_CBS 102198 | (FASTA, Guide tree) |
| H.C.bulbil | HG764313_Cladorrhinum bulbillosum_LC1856 | (HTML, PHYLIP, Clustal) |
| HG764313_Cladorrhinum_bulbillosum_LC1856 | HG764313_Cladorrhinum bulbillosum_LC1856 | (FASTA, Guide tree) |
| K.C.bulbil | KC620185_Cladorrhinum bulbillosum voucher VRF Micro 0303 | (Clustal, PHYLIP, HTML) |
| KC620185_Cladorrhinum_bulbillosum_voucher_VRF_Micro_0303 | KC620185_Cladorrhinum bulbillosum voucher VRF Micro 0303 | (Guide tree, FASTA) |
| M.Pa.equi | MH865115_Papulaspora equi CBS 128688 | (HTML, PHYLIP, Clustal) |
| MH865115_Papulaspora_equi_CBS_128688 | MH865115_Papulaspora equi CBS 128688 | (FASTA, Guide tree) |
| Po.aa.CBS | Podospora austroamericana_CBS 724.68 | (HTML, PHYLIP, Clustal) |
| Po.ah.CBS | Podospora austrohemisphaerica_CBS 216.97 | (Clustal, PHYLIP, HTML) |
| Po.br.CBS | Podospora brasiliensis_CBS 892.96 | (PHYLIP, Clustal, HTML) |
| Po.bua.CBS | Podospora bulbillosa_CBS 304.90 | (HTML, PHYLIP, Clustal) |
| Po.bua.gen | Podospora bulbillosa_genomic DNA_OW985113 | (Clustal, PHYLIP, HTML) |
| Po.c.CBS_1 | Podospora communis_CBS 118393 | (Clustal, PHYLIP, HTML) |
| Po.f.CBS_3 | Podospora fibrinocaudata_CBS 315.91 | (HTML, PHYLIP, Clustal) |
| Po.s.CBS_4 | Podospora setosa_CBS 435.50 | (HTML, Clustal, PHYLIP) |
| Po.t.CBS_2 | Podospora tarvisina_CBS 265.70 | (HTML, PHYLIP, Clustal) |
| Po.u.CBS_2 | Podospora unicaudata_CBS 240.71 | (PHYLIP, Clustal, HTML) |
| Podospora_austroamericana_CBS_724.68 | Podospora austroamericana_CBS 724.68 | (FASTA, Guide tree) |
| Podospora_austrohemisphaerica_CBS_216.97 | Podospora austrohemisphaerica_CBS 216.97 | (Guide tree, FASTA) |
| Podospora_brasiliensis_CBS_892.96 | Podospora brasiliensis_CBS 892.96 | (Guide tree, FASTA) |
| Podospora_bulbillosa_CBS_304.90 | Podospora bulbillosa_CBS 304.90 | (FASTA, Guide tree) |
| Podospora_bulbillosa_genomic_DNA_OW985113 | Podospora bulbillosa_genomic DNA_OW985113 | (Guide tree, FASTA) |
| Podospora_communis_CBS_118393 | Podospora communis_CBS 118393 | (Guide tree, FASTA) |
| Podospora_fibrinocaudata_CBS_315.91 | Podospora fibrinocaudata_CBS 315.91 | (FASTA, Guide tree) |
| Podospora_setosa_CBS_435.50 | Podospora setosa_CBS 435.50 | (FASTA, Guide tree) |
| Podospora_tarvisina_CBS_265.70 | Podospora tarvisina_CBS 265.70 | (FASTA, Guide tree) |
| Podospora_unicaudata_CBS_240.71 | Podospora unicaudata_CBS 240.71 | (Guide tree, FASTA) |
| PV.Po.bulb | PV469924_Podospora bulbillosa_L-1030/2025 | (PHYLIP, Clustal, HTML) |
| PV469924_Podospora_bulbillosa_L-1030/2025 | PV469924_Podospora bulbillosa_L-1030/2025 | (Guide tree, FASTA) |
| S3.PX04876 | SSDN31323_PX048761 | (PHYLIP, Clustal, HTML) |
| S43.PX0487 | SSDN43522_PX048796 | (Clustal, PHYLIP, HTML) |
| S46.PX0488 | SSDN46222_PX048857 | (Clustal, PHYLIP, HTML) |
| SSDN31323_PX048761 | SSDN31323_PX048761 | (Guide tree, FASTA) |
| SSDN43522_PX048796 | SSDN43522_PX048796 | (Guide tree, FASTA) |
| SSDN46222_PX048857 | SSDN46222_PX048857 | (Guide tree, FASTA) |
Download taxon names association table
Warning: MUSCLE returned the following warnings:
MUSCLE:
detected leading and trailing spaces in sequence #5 name were removed.
detected leading and trailing spaces in sequence #7 name were removed.
detected leading and trailing spaces in sequence #8 name were removed.
detected leading and trailing spaces in sequence #9 name were removed.
detected leading and trailing spaces in sequence #10 name were removed.
detected leading and trailing spaces in sequence #11 name were removed.
detected leading and trailing spaces in sequence #17 name were removed.
MUSCLE:
detected leading and trailing spaces in sequence #5 name were removed.
detected leading and trailing spaces in sequence #7 name were removed.
detected leading and trailing spaces in sequence #8 name were removed.
detected leading and trailing spaces in sequence #9 name were removed.
detected leading and trailing spaces in sequence #10 name were removed.
detected leading and trailing spaces in sequence #11 name were removed.
detected leading and trailing spaces in sequence #17 name were removed.
Multiple sequence alignment editor:
(If you expect to edit the alignment by yourself, you can consult Jalview multiple alignment editor documentation
.)Please cite:
- Dereeper A., Audic S., Claverie J.M., Blanc G. BLAST-EXPLORER helps you building datasets for phylogenetic analysis. BMC Evol Biol. 2010 Jan 12;10:8. (PubMed)
- Dereeper A.*, Guignon V.*, Blanc G., Audic S., Buffet S., Chevenet F., Dufayard J.F., Guindon S., Lefort V., Lescot M., Claverie J.M., Gascuel O. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9. Epub 2008 Apr 19. (PubMed) *: joint first authors
- Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, Mar 19;32(5):1792-7. (PubMed)
