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| podospora |
Alignment
MUSCLE 
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Phylogeny results
Figure 1: Phylogenetic tree.
Input:
Outputs:
Tree in Newick format (automatically recognized by MEGA if installed) Statistics fileSubstitution model: HKY85
Gamma shape parameter: 0.506
Transition/transversion ratio: 3.170
Number of categories: 4
Proportion of invariant: 0.493
Taxon names association table
| Output Taxon Name | Original (Long) Taxon Name | |
|---|---|---|
| Chaetomium_globosum_CBS_160.62 | Chaetomium globosum_CBS 160.62 | (Newick) |
| Cladorrhinum_bulbillosum_UOA/HCPF_11454 | Cladorrhinum bulbillosum_UOA/HCPF 11454 | (Newick) |
| Cladorrhinum_hyalocarpum_CBS_102198 | Cladorrhinum hyalocarpum_CBS 102198 | (Newick) |
| HG764313_Cladorrhinum_bulbillosum_LC1856 | HG764313_Cladorrhinum bulbillosum_LC1856 | (Newick) |
| KC620185_Cladorrhinum_bulbillosum_voucher_VRF_Micro_0303 | KC620185_Cladorrhinum bulbillosum voucher VRF Micro 0303 | (Newick) |
| MH865115_Papulaspora_equi_CBS_128688 | MH865115_Papulaspora equi CBS 128688 | (Newick) |
| Podospora_austroamericana_CBS_724.68 | Podospora austroamericana_CBS 724.68 | (Newick) |
| Podospora_austrohemisphaerica_CBS_216.97 | Podospora austrohemisphaerica_CBS 216.97 | (Newick) |
| Podospora_brasiliensis_CBS_892.96 | Podospora brasiliensis_CBS 892.96 | (Newick) |
| Podospora_bulbillosa_CBS_304.90 | Podospora bulbillosa_CBS 304.90 | (Newick) |
| Podospora_bulbillosa_genomic_DNA_OW985113 | Podospora bulbillosa_genomic DNA_OW985113 | (Newick) |
| Podospora_communis_CBS_118393 | Podospora communis_CBS 118393 | (Newick) |
| Podospora_fibrinocaudata_CBS_315.91 | Podospora fibrinocaudata_CBS 315.91 | (Newick) |
| Podospora_setosa_CBS_435.50 | Podospora setosa_CBS 435.50 | (Newick) |
| Podospora_tarvisina_CBS_265.70 | Podospora tarvisina_CBS 265.70 | (Newick) |
| Podospora_unicaudata_CBS_240.71 | Podospora unicaudata_CBS 240.71 | (Newick) |
| PV469924_Podospora_bulbillosa_L-1030/2025 | PV469924_Podospora bulbillosa_L-1030/2025 | (Newick) |
| SSDN31323_PX048761 | SSDN31323_PX048761 | (Newick) |
| SSDN43522_PX048796 | SSDN43522_PX048796 | (Newick) |
| SSDN46222_PX048857 | SSDN46222_PX048857 | (Newick) |
Download taxon names association tableTree viewer:
(requires Java 1.6 or above)
Please cite:
- Dereeper A., Audic S., Claverie J.M., Blanc G. BLAST-EXPLORER helps you building datasets for phylogenetic analysis. BMC Evol Biol. 2010 Jan 12;10:8. (PubMed)
- Dereeper A.*, Guignon V.*, Blanc G., Audic S., Buffet S., Chevenet F., Dufayard J.F., Guindon S., Lefort V., Lescot M., Claverie J.M., Gascuel O. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9. Epub 2008 Apr 19. (PubMed) *: joint first authors
- Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, Mar 19;32(5):1792-7. (PubMed)
- Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol. 2000, Apr;17(4):540-52. (PubMed)
- Guindon S., Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol. 2003, Oct;52(5):696-704. (PubMed)
- Anisimova M., Gascuel O. Approximate likelihood ratio test for branchs: A fast, accurate and powerful alternative. Syst Biol. 2006, Aug;55(4):539-52. (PubMed)
