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Alignment results
Figure 1: Sequence alignment.
Legend:
Similar residues are colored as the most conserved one (according to BLOSUM62).
Average BLOSUM62 score: Max: 3.0 Mid: 1.5 Low: 0.5
Legend:
Similar residues are colored as the most conserved one (according to BLOSUM62).
Average BLOSUM62 score: Max: 3.0 Mid: 1.5 Low: 0.5
Input:
Outputs:
Alignment in Fasta format Alignment in Phylip format Alignment in Clustal formatTaxon names association table
| Output Taxon Name | Original (Long) Taxon Name | |
|---|---|---|
| NR_046261. | NR_046261.1 Sus scrofa 18S ribosomal RNA (RN18S), ribosomal RNA | (HTML, PHYLIP, Clustal) |
| NR_046261.1_Sus_scrofa_18S_ribosomal_RNA_(RN18S),_ribosomal_RNA | NR_046261.1 Sus scrofa 18S ribosomal RNA (RN18S), ribosomal RNA | (FASTA) |
| NR_046261.1_Sus_scrofa_18S_ribosomal_RNA_RN18S_ribosomal_RNA | NR_046261.1 Sus scrofa 18S ribosomal RNA (RN18S), ribosomal RNA | (Guide tree) |
| XR_0070908 | XR_007090847.1 PREDICTED: Homo sapiens 18S ribosomal RNA (LOC124908489), rRNA | (Clustal, PHYLIP, HTML) |
| XR_007090847.1_PREDICTED:_Homo_sapiens_18S_ribosomal_RNA_(LOC124908489),_rRNA | XR_007090847.1 PREDICTED: Homo sapiens 18S ribosomal RNA (LOC124908489), rRNA | (FASTA) |
| XR_007090847.1_PREDICTED_Homo_sapiens_18S_ribosomal_RNA_LOC12490 | XR_007090847.1 PREDICTED: Homo sapiens 18S ribosomal RNA (LOC124908489), rRNA | (Guide tree) |
| XR_0084939 | XR_008493944.2 PREDICTED: Pongo pygmaeus 18S ribosomal RNA (LOC129026211), rRNA | (HTML, PHYLIP, Clustal) |
| XR_008493944.2_PREDICTED:_Pongo_pygmaeus_18S_ribosomal_RNA_(LOC129026211),_rRNA | XR_008493944.2 PREDICTED: Pongo pygmaeus 18S ribosomal RNA (LOC129026211), rRNA | (FASTA) |
| XR_008493944.2_PREDICTED_Pongo_pygmaeus_18S_ribosomal_RNA_LOC129 | XR_008493944.2 PREDICTED: Pongo pygmaeus 18S ribosomal RNA (LOC129026211), rRNA | (Guide tree) |
| XR_0101118 | XR_010111842.1 PREDICTED: Pan paniscus 18S ribosomal RNA (LOC134730177), rRNA | (HTML, PHYLIP, Clustal) |
| XR_010111842.1_PREDICTED:_Pan_paniscus_18S_ribosomal_RNA_(LOC134730177),_rRNA | XR_010111842.1 PREDICTED: Pan paniscus 18S ribosomal RNA (LOC134730177), rRNA | (FASTA) |
| XR_010111842.1_PREDICTED_Pan_paniscus_18S_ribosomal_RNA_LOC13473 | XR_010111842.1 PREDICTED: Pan paniscus 18S ribosomal RNA (LOC134730177), rRNA | (Guide tree) |
Download taxon names association tableMultiple sequence alignment editor:
(If you expect to edit the alignment by yourself, you can consult Jalview multiple alignment editor documentation
.)Please cite:
- Dereeper A., Audic S., Claverie J.M., Blanc G. BLAST-EXPLORER helps you building datasets for phylogenetic analysis. BMC Evol Biol. 2010 Jan 12;10:8. (PubMed)
- Dereeper A.*, Guignon V.*, Blanc G., Audic S., Buffet S., Chevenet F., Dufayard J.F., Guindon S., Lefort V., Lescot M., Claverie J.M., Gascuel O. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9. Epub 2008 Apr 19. (PubMed) *: joint first authors
- Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, Mar 19;32(5):1792-7. (PubMed)
