Phylogeny.fr: "A la Carte" Mode

Equipe MAB - LIRMM

Information Genomique et Structurale

A new version of phylogeny.fr is available: https://www.phylogeny.fr/!

"A la Carte" Mode

Phylogeny
TNT

Tree Rendering
TreeDyn

Tree Rendering results

result tree

Figure 1: Phylogenetic tree.

==> Download the tree: PNG - PDF - SVG - TGF (Treedyn format) - Newick - Text

Select an action:

Reset

Reset (cancel all changes)

Reroot (mid-point)

Mid-point rooting

Colorize using gi

Use Genbank information to automatically rename leaves by: species and gi species only colorize

Collapse branches having branch support value smaller than % or a number of bootstraps smaller than

Select an action and click leaf or internal branch:

Set leaf/subtree color

Colorize leaf branch choose a color color box

color box

and a legend label

Reroot (outgroup)

Reroot (outgroup)

Flip subtree

Flip (flip an entire tree at a node)

Swap subtrees

Swap (flip two branches at a node)

Rename leaf

Change leaf name

Add annotation

Add leaf annotations color color box

color box

Display:

Branch support values Branch lengths None

color:

color box

Display branch support values in %

Display legend

Font:

Tree style:

    Phylogram
    Cladogram (ignore branch lengths)
    Radial (by Drawtree)
    Radial (by TreeDyn)
    Circular

Image size:

80% 100% 150% 200%

Please cite:

Dereeper A., Audic S., Claverie J.M., Blanc G. BLAST-EXPLORER helps you building datasets for phylogenetic analysis. BMC Evol Biol. 2010 Jan 12;10:8. (PubMed)
Dereeper A.*, Guignon V.*, Blanc G., Audic S., Buffet S., Chevenet F., Dufayard J.F., Guindon S., Lefort V., Lescot M., Claverie J.M., Gascuel O. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9. Epub 2008 Apr 19. (PubMed) *: joint first authors
Goloboff P., Farris S., Nixon K. TNT (Tree analysis using New Technology) ver. 1.1 2000, Published by the authors, Tucumán, Argentina.
Chevenet F., Brun C., Banuls AL., Jacq B., Chisten R. TreeDyn: towards dynamic graphics and annotations for analyses of trees. BMC Bioinformatics. 2006, Oct 10;7:439. (PubMed)

Plateformes Aix-Marseille Université

CNRS

Centre
National
de la
Recherche
Scientifique