Processed file: input.fasta
Number of sequences: 20
Alignment assumed to be: DNA
New number of positions: 364 (selected positions are underlined in blue)
10 20 30 40 50 60
=========+=========+=========+=========+=========+=========+
Podospora_aus_o ------------------------CATTATAGAG-AGCTCGTCTCCCTACAACCATCGCG
Podospora_commu CCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTGCAAAACTCCC-ACACCCTTTGTG
KC620185_Clador --------------------------GTTTTGAGTTGCAAAACTCCC-CCAACCATTCGT
HG764313_Clador CCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTGCAAAACTCCC-CAAACCATCGTG
Cladorrhinum_bu CCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTGCAAAACTCCC-CAAACCATCGTG
Podospora_bul_o CCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTGCAAAACTCCC-CAAACCATCGTG
PV469924_Podosp --GTAGGTGAACCTGCGGAGGGATCATTACAGAGTTGCAAAACTCCC-CAAACCATCGTG
SSDN31323_PX048 ------------------------------------------------------------
SSDN43522_PX048 CCGTAGGTGAACCTGCGGAGGGATCATTACAGAGTTGCAAAACTCCC-CAAACCATCGTG
SSDN46222_PX048 ---------------------GATCATTACAGAGTTGCAAAACTCCC-CAAACCATCGTG
Podospora_bul_l -------------------------ATTACAGAGTTGCAA-ACTCCC-CAAACCATCGTG
MH865115_Papula CCGTTGGTGAACCAGCGGAGGGATCATTACAGAGTTGCAAAACTCCC-CAAACCATCGTG
Podospora_fibri -------------------------ATTACAGAGTTGCAAAACTCCC-TAAACCATCGCG
Chaetomium_glob -------------------------ATTACAGAGTTGCAAAACTCCC-TAAACCATTGTG
Cladorrhinum_hy -------------------------ATTACAGAGTTGCAAAACTCCC-TAAACCATCGCG
Podospora_aus_a CCGTTGGTGAACCAGCGGAGGGATCATGAAAGGGTTGCAAGACTCCCCTAAACCATCGTG
Podospora_unica CCGTTGGTGAACCAGCGGAGGGATCATTAAAGAGTTGCAAAACTCCCATAAACCATCGTG
Podospora_setos --------------GCGGAGGGATCATTAAAGAGTTGCAAAACTCCCTTAAACCATCGTG
Podospora_tarvi CCGTTGGTGAACCAGCGGAGGGATCATTAAAGAGTTGCAAAACTCCCTTAAACCATCGTG
Podospora_brasi CCGTTGGTGAACCAGCGGAGGGATCATTAAAGAGTTGCAAAACTCCCTTAAACCATCGTG
70 80 90 100 110 120
=========+=========+=========+=========+=========+=========+
Podospora_aus_o AACG-ATACC-CCGGACCGTTCCCTCGGCGG-A--------CCGGCGA------------
Podospora_commu AACG--CACTG--GAACTACTGCTTCGGCGG-GCAGC----TCTTCAG------------
KC620185_Clador GACCTTTACCGCTAAACAGTTGCTTCGGCGG-GTGG-----CCCGCGG--GTGCGCGCGC
HG764313_Clador AACCTTTACCGCTAAACAGTTGCTTCGGCGG-GTGG-----CCCGCGG--GTGCGCGCGC
Cladorrhinum_bu AACCTTTACCGCTAAACAGTTGCTTCGGCGG-GTGG-----CCCGCGGGTGTGCGCGCGC
Podospora_bul_o AACCTTTACCGCTAAACAGTTGCTTCGGCGG-GTGG-----CCCGCGG--GTGCGCGCGC
PV469924_Podosp AACCTTTACCGCTAAACAGTTGCTTCGGCGG-GTGG-----CCCGCGGGTGTGCGCGCGC
SSDN31323_PX048 --CCTTTACCGCTAAACAGTTGCTTCGGCGG-GTGG-----CCCGCGG--GTGCGCGCGC
SSDN43522_PX048 AACCTTTACCGCTAAACAGTTGCTTCGGCGG-GTGG-----CCCGCGG--GTGCGCGCGC
SSDN46222_PX048 AACCTTTACCGCTAAACAGTTGCTTCGGCGG-GTGG-----CCCGCGG--GTGCGCGCGC
Podospora_bul_l AACCTTTACCGCTAAACAGTTGCTTCGGCGG-GTGG-----CCCGCGG--GGGTGCGCGC
MH865115_Papula AACCTTTACCGCTAAACAGTTGCTTCGGCGG-GTGG-----CCCGCGG--GGGTGCGCGC
Podospora_fibri AACG--TACC-CCGTACAGTTGCTTCGGCGCGGCGGC----TCCTCGG------------
Chaetomium_glob AACG-TTAC--CTATACCGTTGCTTCGGCGG-GCGG-----CCCCGGG------GTTTAC
Cladorrhinum_hy AACC--CACCCCTAAACAGTTGCTTCGGCGGCGCCAGAGGCCCTACGG------------
Podospora_aus_a AACC--CACCTCTGAACAGTTGCTTCGGCAG-GCCGGCCC-CCTCCGG------------
Podospora_unica AACG--TACCCCTGAACAGTTGCTTCGGCAG-GCCGGCCCCCCACCAG------------
Podospora_setos AACG--TACCTCTGAACAGTTGCTTCGGCAG-GCCGGCCC-CCCCCGG------------
Podospora_tarvi AACG--TACCTCTGAACAGTTGCTTCGGCAG-GCCGGCCC-CCCCCGG------------
Podospora_brasi AACG--TACCTCTGAACAGTTGCTTCGGCAG-GCCGGCC--CCCCCGG------------
##################
130 140 150 160 170 180
=========+=========+=========+=========+=========+=========+
Podospora_aus_o --------CCCCCGCGCGGGGCGCCGG----GC--GCCGGGGGAGCG-C-CCCCAGACCC
Podospora_commu --------------TGGGCA-----------GCCCGCCGGAGAAG-----CACTAAACTC
KC620185_Clador GCAAGCCGCGCCCCCGGGGGCCGCCGA----GCCCGCCGGAGGAATC---CAAAAAACCA
HG764313_Clador GCAAGCCGCGCCCCCGGGGGCCGCCGA----GCCCGCCGGAGGAATC---CAAAAAACCA
Cladorrhinum_bu GCAAGCCGCGCCCCCGGGGGCCGCCGA----GCCCGCCGGAGGAATC---CAAAAAACCA
Podospora_bul_o GCAAGCCGCGCCCCCGGGGGCCGCCGA----GCCCGCCGGAGGAATC---CAAAAAACCA
PV469924_Podosp GCAAGCCGCGCCCCCGGGGGCCGCCGA----GCCCGCCGGAGGAATC---CAAAAAACCA
SSDN31323_PX048 GCAAGCCGCGCCCCCGGGGGCCGCCGA----GCCCGCCGGAGGAATC---CAAAAAACCA
SSDN43522_PX048 GCAAGCCGCGCCCCCGGGGGCCGCCGA----GCCCGCCGGAGGAATC---CAAAAAACCA
SSDN46222_PX048 GCAAGCCGCGCCCCCGGGGGCCGCCGA----GCCCGCCGGAGGAATC---CAAAAAACCA
Podospora_bul_l GCAAGCCGCGCCCCTGGGGGCCGCCGA----GCCCGCCGGAGGAATC---CAAAAAACCA
MH865115_Papula GCAAGCCGCGCCCCCGGGGGCCGCCGA----GCCCGCCGGAGGAATC---CAAAAAACCA
Podospora_fibri --------AGCCCTCGG---CCCTCACGGGCGCCCGCCGGAGTGACCATACCCCAAACTA
Chaetomium_glob CCCCCGGGCGCCCCTGGGCCCCACCGCGGGCGCCCGCCGGAGGT------CACCAAACTC
Cladorrhinum_hy ------------CCCGAG-------------GCCCGCCGGGG--ACC---CCCCAAACTC
Podospora_aus_a ---------------GGGTGCCGCCAAAG--GCCTGCCGAAGGTACC------AAAACCA
Podospora_unica ---------------GGGTGCCGCCAAAG--GCCTGCCGGAGGTACC------CAAACCA
Podospora_setos ----------------GGTGCCGCCAAAG--GCCTGCCGAAGGTACC------CAAACCA
Podospora_tarvi ----------------GGTGCCGCCAAAG--GCCTGCCGAAGGTACC------CAAACCA
Podospora_brasi ----------------GGTGCCGCCAAAG--GCCTGCCGAAGGTACC------CAAACCA
######
190 200 210 220 230 240
=========+=========+=========+=========+=========+=========+
Podospora_aus_o TTGCA--GTCAGT---GGCCTCTCTGAGT-AGTGATTTGTAAAAACGAGTCAAAACTTTC
Podospora_commu TTGTATTTTT------GGCTTCTCTGAGT-GATTATAC-----AATGAATCAAAACTTTC
KC620185_Clador TCGCT--TTCAGTACCGGCCTCTCTGAGT-TACTGTACTTTTAATTAAGTCAAAACTTTC
HG764313_Clador TCGCT--TTCAGTACCGGCCTCTCTGAGT-TACTGTACTTTTAATTAAGTCAAAACTTTC
Cladorrhinum_bu TCGCT--TTCAGTACCGGCCTCTCTGAGT-TACTGTACTTTTAATTAAGTCAAAACTTTC
Podospora_bul_o TCGCT--TTCAGTACCGGCCTCTCTGAGT-TACTGTACTTTTAATTAAGTCAAAACTTTC
PV469924_Podosp TCGCT--TTCAGTACCGGCCTCTCTGAGT-TACTGTACTTTTAATTAAGTCAAAACTTTC
SSDN31323_PX048 TCGCT--TTCAGTACCGGCCTCTCTGAGT-TACTGTACTTTTAATTAAGTCAAAACTTTC
SSDN43522_PX048 TCGCT--TTCAGTACCGGCCTCTCTGAGT-TACTGTACTTTTAATTAAGTCAAAACTTTC
SSDN46222_PX048 TCGCT--TTCAGTACCGGCCTCTCTGAGT-TACTGTACTTTTAATTAAGTCAAAACTTTC
Podospora_bul_l TCGCT--TTCAGTACCGGCCTCTCTGAGT-TACTGTACTTTTAATTAAGTCAAAACTTTC
MH865115_Papula TCGCT--TTCAGTACCGGCCTCTCTGAGT-TACTGTACTTTTAATTAAGTCAAAACTTTC
Podospora_fibri TTTATATTCTA-----GGCCTCTCTGAGT----AATACTAT--AATAAGTAAAAACTTTC
Chaetomium_glob TTGATAATTTA----TGGCCTCTCTGAGTCTTCTGTACTG---AATAAGTCAAAACTTTC
Cladorrhinum_hy TTGTTTTTTCACAAATGGCCTCTCTGAGT--ACTGTACTTT--AATAAGTCAAAACTTTC
Podospora_aus_a TTGTC--TTTAGCA--GGCCTCTCTGAGT--AACGTACTT---AATAAGTCAAAACTTTC
Podospora_unica TTGTT--TT---TACAGGCCTCTCTGAGT--ATCGTACTT---AATAAGTCAAAACTTTC
Podospora_setos TTGTT--TT---TACAGGCCTCTCTGAGT--ATCGTACTT---AATAAGTCAAAACTTTC
Podospora_tarvi TTGTT--TT---TACAGGCCTCTCTGAGT--ATCGTACTT---AATAAGTCAAAACTTTC
Podospora_brasi TTGTT--TT---TACAGGCCTCTCTGAGT--ATCGTACTT---AATAAGTCAAAACTTTC
##### ############# #################
250 260 270 280 290 300
=========+=========+=========+=========+=========+=========+
Podospora_aus_o AACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATG
Podospora_commu AACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATG
KC620185_Clador AACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATG
HG764313_Clador AACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATG
Cladorrhinum_bu AACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATG
Podospora_bul_o AACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATG
PV469924_Podosp AACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATG
SSDN31323_PX048 AACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATG
SSDN43522_PX048 AACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATG
SSDN46222_PX048 AACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATG
Podospora_bul_l AACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATG
MH865115_Papula AACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATG
Podospora_fibri AACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATG
Chaetomium_glob AACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATG
Cladorrhinum_hy AACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATG
Podospora_aus_a AACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATG
Podospora_unica AACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATG
Podospora_setos AACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATG
Podospora_tarvi AACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATG
Podospora_brasi AACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATG
############################################################
310 320 330 340 350 360
=========+=========+=========+=========+=========+=========+
Podospora_aus_o TGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTACT
Podospora_commu TGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGCCAGCACT
KC620185_Clador TGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATT
HG764313_Clador TGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATT
Cladorrhinum_bu TGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATT
Podospora_bul_o TGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATT
PV469924_Podosp TGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATT
SSDN31323_PX048 TGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATT
SSDN43522_PX048 TGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATT
SSDN46222_PX048 TGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATT
Podospora_bul_l TGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATT
MH865115_Papula TGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATT
Podospora_fibri TGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATT
Chaetomium_glob TGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATT
Cladorrhinum_hy TGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCGAGTATT
Podospora_aus_a TGAATTGCAGAATCCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATT
Podospora_unica TGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATT
Podospora_setos TGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATT
Podospora_tarvi TGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATT
Podospora_brasi TGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATT
############################################################
370 380 390 400 410 420
=========+=========+=========+=========+=========+=========+
Podospora_aus_o CTGGCGGGCATGCCTGTCCGAGCGCCATTTCAACCATCAAGCCCC---GCTTGCGTTGGG
Podospora_commu CTGGCAGGCATGCCTGTTCGAGCGTCATTTCAACCATCAAG-CCCTAGGCTTGCGTTGGA
KC620185_Clador CTGACGGGCATGCCTGTTCGAGCGTCATTTCCACCATCAGGCCCCCGGGCCTGTGTTGGG
HG764313_Clador CTGGCGGGCATGCCTGTTCGAGCGTCATTTCCACCATCAGGCCCCCGGGCCTGTGTTGGG
Cladorrhinum_bu CTGGCGGGCATGCCTGTTCGAGCGTCATTTCCACCATCAGGCCCCCGGGCCTGTGTTGGG
Podospora_bul_o CTGGCGGGCATGCCTGTTCGAGCGTCATTTCCACCATCAGGCCCCCGGGCCTGTGTTGGG
PV469924_Podosp CTGGCGGGCATGCCTGTTCGAGCGTCATTTCCACCATCAGGCCCCCGGGCCTGTGTTGGG
SSDN31323_PX048 CTGGCGGGCATGCCTGTTCGAGCGTCATTTCCACCATCAGGCCCCCGGGCCTGTGTTGGG
SSDN43522_PX048 CTGGCGGGCATGCCTGTTCGAGCGTCATTTCCACCATCAGGCCCCCGGGCCTGTGTTGGG
SSDN46222_PX048 CTGGCGGGCATGCCTGTTCGAGCGTCATTTCCACCATCAGGCCCCCGGGCCTGTGTTGGG
Podospora_bul_l CTGGCGGGCATGCCTGTTCGAGCGTCATTTCCACCATCAGGCCCCCGGGCCTGTGTTGGG
MH865115_Papula CTGGCGGGCATGCCTGTTCGAGCGTCATTTCCACCATCAGGCCCCCGGGCCTGTGTTGGG
Podospora_fibri CTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCATCAAGCCC---AGCTTGTGTTGGG
Chaetomium_glob CTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCATCAAGCCCCCGGGCTTGTGTTGGG
Cladorrhinum_hy CTCGCGGGCATGCCTGTTCGAGCGTCATTTCAACCATCAAGCCCCCCGGCTTGTGTTGGG
Podospora_aus_a CTGGCGGGCATGCCTGTCCGAGCGTCATTTCAGCCATCAAG-CCCCTGGCTTGTGTTGGG
Podospora_unica CTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCATCAAG-CCCCGGGCTTGTGTTGGG
Podospora_setos CTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCATCAAG-CCCCGGGCTTGTGTTGGG
Podospora_tarvi CTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCATCAAG-CCCCGGGCTTGTGTTGGG
Podospora_brasi CTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCATCAAG-CCCCGGGCTTGTGTTGGG
######################################### ############
430 440 450 460 470 480
=========+=========+=========+=========+=========+=========+
Podospora_aus_o GACCTGCGGCTGCCCGCAGGCCCTGAAAACCAGTGGCGGGCTCGCTAGCAACACCGAGCG
Podospora_commu GCCCTGCGGCTG-CCGCAGGCCCCTAAAAGCAGTGGCGGGCTCGCTATCAC-ACCGAGTG
KC620185_Clador GACCTGCGGCTGCCCGCAGGCCCCGAAATTCAGTGGCGGTCGCGCCGTAGCAACCGAGCG
HG764313_Clador GACCTGCGGCTGCCCGCAGGCCCCGAAATTCAGTGGCGGTCGCGCCGTAGCAACCGAGCG
Cladorrhinum_bu GACCTGCGGCTGCCCGCAGGCCCCGAAATTCAGTGGCGGTCGCGCCGTAGCAACCGAGCG
Podospora_bul_o GACCTGCGGCTGCCCGCAGGCCCCGAAATTCAGTGGCGGTCGCGCCGTAGCAACCGAGCG
PV469924_Podosp GACCTGCGGCTGCCCGCAGGCCCCGAAATTCAGTGGCGGTCGCGCCGTAGCAACCGAGCG
SSDN31323_PX048 GACCTGCGGCTGCCCGCAGGCCCCGAAATTCAGTGGCGGTCGCGCCGTAGCAACCGAGCG
SSDN43522_PX048 GACCTGCGGCTGCCCGCAGGCCCCGAAATTCAGTGGCGGTCGCGCCGTAGCAACCGAGCG
SSDN46222_PX048 GACCTGCGGCTGCCCGCAGGCCCCGAAATTCAGTGGCGGTCGCGCCGTAGCAACCGAGCG
Podospora_bul_l GACCTGCGGCTGCCCGCAGGCCCCGAAATTCAGTGGCGGTCGCGCCGTAGCAACCGAGCG
MH865115_Papula GACCTGCGGCTGCCCGCAGGCCCCGAAATTCAGTGGCGGTCGCGCCGTAGCAACCGAGCG
Podospora_fibri GCCCTGCGCCTG----CAGGCCCTTAAAACCAGTGGCGGGCTCGCC-TACACTCCGAGCG
Chaetomium_glob GACCTGCGGCTG-CCGCAGGCCCTGAAAAGCAGTGGCGGGCTCGCTGTCGC-ACCGAGCG
Cladorrhinum_hy GACCTGCGGCTG-CCGCAGGCCCTGAAATCCAGTGGCGGGCTCGCTGTCGC-ACCGAGCG
Podospora_aus_a GACCTGCGTCCG-ACGCAGGCCCCGAAAACCAGTGGCGGGCTCGCTGTCCACACCGAGCG
Podospora_unica GACCTGCGTCCG-ACGCAGGCCCTGAAAACCAGTGGCGGGCTCGCTGTCCACACCGAGCG
Podospora_setos GACCTGCGTCCG-ACGCAGGCCCTGAAAACCAGTGGCGGGCTCGCTGTCCACACCGAGCG
Podospora_tarvi GACCTGCGTCCG-ACGCAGGCCCTGAAAACCAGTGGCGGGCTCGCTGTCCACACCGAGCG
Podospora_brasi GACCTGCGTCCG-ACGCAGGCCCTGAAAACCAGTGGCGGGCTCGCTGTCCACACCGAGCG
############ ############################## ########
490 500 510 520 530 540
=========+=========+=========+=========+=========+=========+
Podospora_aus_o CAGTAGC--ATACACCTCGCTCCGGT--CGTTCTGCGGGTCCCGGCCGT-GAAACGCCCC
Podospora_commu CAGTAGATTA--CTCTTCGCTCAGGG--CGTGTGGCGGGTTCCAGCCGT-GAAACCCCTA
KC620185_Clador TAGTAACTAAAACGTCTCGCTCTGGCT-CGCTGGGCGCGCTCCGGCCGTAAAAACAACCC
HG764313_Clador TAGTAACTAAAACGTCTCGCTCTGGCT-CGCTGGGCGCGCTCCGGCCGT-AAAACACCCC
Cladorrhinum_bu TAGTAACTAAAACGTCTCGCTCTGGCT-CGCTGGGCGCGCTCCGGCCGT-AAAACACCCC
Podospora_bul_o TAGTAACTAAAACGTCTCGCTCTGGCTCCGCTGGGCGCGCTCCGGCCGT-AAAACACCCC
PV469924_Podosp TAGTAACTAAAACGTCTCGCTCTGGCT-CGCTGGGCGCGCTCCGGCCGT-AAAACACCCC
SSDN31323_PX048 TAGTAACTAAAACGTCTCGCTCTGGCT-CGCTGGGCGCGCTCCGGCCGT-AAAACACCCC
SSDN43522_PX048 TAGTAACTAAAACGTCTCGCTCTGGCT-CGCTGGGCGCGCTCCGGCCGT-AAAACACCCC
SSDN46222_PX048 TAGTAACTAAAACGTCTCGCTCTGGCT-CGCTGGGCGCGCTCCGGCCGT-AAAACACCCC
Podospora_bul_l TAGTAACTAAAACGTCTCGCTCTGGCT-CGCTGGGCGCGCTCCGGCCGT-AAAACACCCC
MH865115_Papula TAGTAACTAAAACGTCTCGCTCTGGCT-CGCTGGGCGCGCTCCGGCCGT-AAAACACCCC
Podospora_fibri CAGTAAT----ACATCTCGTTCTGGT--CGTGTGGCGGGCGCTTGCCGT-AAAACACCCC
Chaetomium_glob TAGTAGC--ATACATCTCGCTCTGGT--CGCGCCGCGGGTTCCGGCCGTTAAACCACC--
Cladorrhinum_hy TAGTAGC--ATACTTCTCGCTCCGGG--AGCGCGGCGGGCGCCTGCCGT-AAAACCCCCT
Podospora_aus_a TAGTAGCTAA----CCTCGCTATGG---AGTGGCGCGGGCGCCTGCCGT-AAAACCCCCA
Podospora_unica TAGTAACTAA----CCTCGCTATGG---AGTGGCGCGGGCGCCTGCCGT-AAAACCCCCA
Podospora_setos TAGTAACTAA----CCTCGCTATGG---AGTGGCGCGGGCGCCTGCCGT-AAAACCCCCA
Podospora_tarvi TAGTAACTAA----CCTCGCTATGG---AGTGGCGCGGGCGCCTGCCGT-AAAACCCCCA
Podospora_brasi TAGTAACTAA----CCTCGCTATGG---AGTGGCGCGGGCGCCTGCCGT-AAAACCCCCA
####### ########### #####################
550 560 570 580 590 600
=========+=========+=========+=========+=========+=========+
Podospora_aus_o CCATAGCACAAAAAGGTTGGCCTC-GGATCAGGTAGGAATACCCGCTGAACTTAAGCATA
Podospora_commu CTTCT------CAAGGTTGACCTC-GGATCAGGTAGGAATACCCGCTGAACTTAAGCATA
KC620185_Clador CCCTTTTCGC-AAAGGTTGACCTCGGGATCAGGTAGGAATACCCGCTGAACTTAAGCATA
HG764313_Clador CCCTTTTCGC-AAAGGTTGACCTC-GGATCAGGTAGGAATACCCGCTGAACTTAAGCATA
Cladorrhinum_bu CCCTTTTCGC-AAAGGTTGACCTC-GGATCAGGTAGGAATACCCGCTGAACTTAAGCATA
Podospora_bul_o CCCTTTTCGC-AAAGGTTGACCTC-GGATCAGGTAGGAATACCCGCTGAACTTAAGCATA
PV469924_Podosp CCCTTTTCGCAAAAGGTTGACCTC-GGATCAGGTAGGAATACCCGCTGAACTTAAGCATA
SSDN31323_PX048 CCCTTTTCGC-AAAGGTTGACCTC-GGATCAGGTAGGAATACCCGCTGAACTTAAGCATA
SSDN43522_PX048 CCCTTTTCGC-AAAGGTTGACCTC-GGATCAGGTAGGAATACCCGCTGAACTTAAGCATA
SSDN46222_PX048 CCCTTTTCGC-AAAGGTTGACCTC-GGATCAGGTAGGAATACCCGCTGAACTTAAGCATA
Podospora_bul_l CCCTTTTCGC-AAAGGTTGACCTC-GGATCAGGTAGGAATACCCGCTGAACTTAAGCATA
MH865115_Papula CCCTTTTCGC-AAAGGTTGACCTC-GGATCAGGTAGGAATACCCGCTGAACTTAAGCATA
Podospora_fibri CCTTCT-----CAAGGTTGACCTC-GGATCAGGTAGGAATACCCGCTGAACTTAAGCATA
Chaetomium_glob ---TTTTAACCCAAGGTTGACCTC-GGATCAGGTAGGAAGACCCGCTGAACTTAA-----
Cladorrhinum_hy ACATACC----AAAGGTTGACCTC-GGATCAGGTAGGAATACCCGCTGAACTTAAGCATA
Podospora_aus_a ATTTTA-----CAAGGTTGACCTC-GGATCAGGTAGGAATACCCGCTGAACTTAAGCATA
Podospora_unica ATTTTTA----CAAGGTTGACCTC-GGATCAGGTAGGAATACCCGCTGAACTTAAGCATA
Podospora_setos ATTTTTA----CAAGGTTGACCTC-GGATCAGGTAGGAATACCCGCTGAACTTAAGCATA
Podospora_tarvi ATTTTTA----CAAGGTTGACCTC-GGATCAGGTAGGAATACCCGCTGAACTTAAGCATA
Podospora_brasi ATTTTTA----CAAGGTTGACCTC-GGATCAGGTAGGAATACCCGCTGAACTTAAGCATA
############# ##############################
610
=========+========
Podospora_aus_o TCAAT-A-----------
Podospora_commu TCAA--------------
KC620185_Clador TCAATAAAGCGGGAGGA-
HG764313_Clador TCAAT-AAGCGG------
Cladorrhinum_bu TCAAT-AAGCGGAGGA--
Podospora_bul_o TCAATAAAGCGGAGGA--
PV469924_Podosp TCAAT-AAGCG-------
SSDN31323_PX048 TCAAT-AAGCGGAGGAA-
SSDN43522_PX048 TCAAT-A-----------
SSDN46222_PX048 TCAAT-------------
Podospora_bul_l TCAAT-AAGCGGAGGAA-
MH865115_Papula TCAA--------------
Podospora_fibri TCAAT-AAGCGGAGGAAA
Chaetomium_glob ------------------
Cladorrhinum_hy TCAAT-AAGCGGAGGAAA
Podospora_aus_a TCAAT-AAGCGGAGGAA-
Podospora_unica TCATA-------------
Podospora_setos TCAAT-AAGCGGAGGA--
Podospora_tarvi TCAAT-A-----------
Podospora_brasi TCAAT-AGGCGGGAGGAA
Parameters used Minimum Number Of Sequences For A Conserved Position: 11 Minimum Number Of Sequences For A Flanking Position: 17 Maximum Number Of Contiguous Nonconserved Positions: 8 Minimum Length Of A Block: 10 Allowed Gap Positions: None
Flank positions of the 11 selected block(s) Flanks: [74 91] [175 185] [197 209] [224 401] [409 432] [437 466] [473 487] [495 505] [509 529] [552 564] [566 595] New number of positions in input.fasta-gb: 364 (58% of the original 618 positions)