oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo --- PhyML v3.0 --- A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood Stephane Guindon & Olivier Gascuel http://atgc.lirmm.fr/phyml Copyright CNRS - Universite Montpellier II oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Sequence file : phymlE8dzPHqe/input.phy . Data set : #1 . Tree search : NNIs. Initial tree : BIONJ . Model of nucleotides substitution : GTR . Number of taxa : 4 . Log-likelihood : -2687.40601 . Discrete gamma model : Yes - Number of categories : 4 - Gamma shape parameter : 88.521 . Proportion of invariant : 0.830 . Nucleotides frequencies : - f(A)= 0.22407 - f(C)= 0.26585 - f(G)= 0.29460 - f(T)= 0.21548 . GTR relative rate parameters : A <-> C 1245.12334 A <-> G 2279.90701 A <-> T 1.00000 C <-> G 1.00000 C <-> T 8211.94805 G <-> T 1.00000 . Instantaneous rate matrix : [A---------C---------G---------T------] -0.72121 0.23805 0.48301 0.00015 0.20064 -1.47334 0.00021 1.27249 0.36738 0.00019 -0.36773 0.00015 0.00016 1.56998 0.00021 -1.57036 . Time used 0h0m0s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo