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ClustalW 2.1 (doc)
Alignment: ClustalW
Figure 1: Multiple sequence alignment (HTML format).
Input:
Outputs:
Alignment in Fasta format Alignment in Phylip format Alignment in Clustal formatTaxon names association table
| Output Taxon Name | Original (Long) Taxon Name | |
|---|---|---|
| Bacillus_a | Bacillus amyloliquefaciens strain MR-AI 16S ribosomal RNA gene, | (PHYLIP, Clustal, HTML) |
| Bacillus_amyloliquefaciens_strain_MR-AI_16S_ribosomal_RNA_gene | Bacillus amyloliquefaciens strain MR-AI 16S ribosomal RNA gene, | (Guide tree) |
| Bacillus_amyloliquefaciens_strain_MR-AI_16S_ribosomal_RNA_gene, | Bacillus amyloliquefaciens strain MR-AI 16S ribosomal RNA gene, | (FASTA) |
| Bacillus_s | Bacillus subtilis strain BJ1-3 16S ribosomal RNA gene, partial | (Clustal, PHYLIP, HTML) |
| Bacillus_subtilis_strain_BJ1-3_16S_ribosomal_RNA_gene,_partial | Bacillus subtilis strain BJ1-3 16S ribosomal RNA gene, partial | (FASTA) |
| Bacillus_subtilis_strain_BJ1-3_16S_ribosomal_RNA_gene_partial | Bacillus subtilis strain BJ1-3 16S ribosomal RNA gene, partial | (Guide tree) |
| Clostridiu | Clostridium perfringens partial 16S rRNA gene, strain ATCC 13124. | (Clustal, PHYLIP, HTML) |
| Clostridium_perfringens_partial_16S_rRNA_gene,_strain_ATCC_13124. | Clostridium perfringens partial 16S rRNA gene, strain ATCC 13124. | (FASTA) |
| Clostridium_perfringens_partial_16S_rRNA_gene_strain_ATCC_13124. | Clostridium perfringens partial 16S rRNA gene, strain ATCC 13124. | (Guide tree) |
| coccus_f27 | coccus f27 | (HTML, PHYLIP, Clustal, FASTA, Guide tree) |
| Staphylo_c | Staphylococcus sp. 16b-5B 16S ribosomal RNA gene, partial sequence gi|45504934|gb|AY561557.1| | (PHYLIP) |
| Staphylo_s | Staphylococcus pasteuri strain ELA-9 16S ribosomal RNA gene, partial sequence gi|208657451|gb|FJ195007.1| | (PHYLIP, Clustal, HTML) |
| Staphylo_u | Staphylococcus sp. 16b-5B 16S ribosomal RNA gene, partial sequence gi|45504934|gb|AY561557.1| | (Clustal, HTML) |
| Staphylococcus_epidermidis_partial_16S_rRNA_gene,_strain_MBJS1. | Staphylococcus epidermidis partial 16S rRNA gene, strain MBJS1. | (FASTA) |
| Staphylococcus_epidermidis_partial_16S_rRNA_gene_strain_MBJS1. | Staphylococcus epidermidis partial 16S rRNA gene, strain MBJS1. | (Guide tree) |
| Staphylococcus_pasteuri_strain_ELA-9_16S_ribosomal_RNA_gene,_partial_sequence_g | Staphylococcus pasteuri strain ELA-9 16S ribosomal RNA gene, partial sequence gi|208657451|gb|FJ195007.1| | (FASTA) |
| Staphylococcus_pasteuri_strain_ELA-9_16S_ribosomal_RNA_gene_part | Staphylococcus pasteuri strain ELA-9 16S ribosomal RNA gene, partial sequence gi|208657451|gb|FJ195007.1| | (Guide tree) |
| Staphylococcus_sp._16b-5B_16S_ribosomal_RNA_gene,_partial_sequence_gi|45504934| | Staphylococcus sp. 16b-5B 16S ribosomal RNA gene, partial sequence gi|45504934|gb|AY561557.1| | (FASTA) |
| Staphylococcus_sp._16b-5B_16S_ribosomal_RNA_gene_partial_sequenc | Staphylococcus sp. 16b-5B 16S ribosomal RNA gene, partial sequence gi|45504934|gb|AY561557.1| | (Guide tree) |
Download taxon names association table
Warning: ClustalW returned the following warnings:
ClustalW:
detected leading and trailing spaces in sequence #1 name were removed.
sequence #1 name is too long (greater or equal to 80 characters).
detected leading and trailing spaces in sequence #2 name were removed.
sequence #2 name is too long (greater or equal to 80 characters).
ClustalW:
detected leading and trailing spaces in sequence #1 name were removed.
sequence #1 name is too long (greater or equal to 80 characters).
detected leading and trailing spaces in sequence #2 name were removed.
sequence #2 name is too long (greater or equal to 80 characters).
Multiple sequence alignment editor:
(If you expect to edit the alignment by yourself, you can consult Jalview multiple alignment editor documentation
.)Please cite:
- Dereeper A., Audic S., Claverie J.M., Blanc G. BLAST-EXPLORER helps you building datasets for phylogenetic analysis. BMC Evol Biol. 2010 Jan 12;10:8. (PubMed)
- Dereeper A.*, Guignon V.*, Blanc G., Audic S., Buffet S., Chevenet F., Dufayard J.F., Guindon S., Lefort V., Lescot M., Claverie J.M., Gascuel O. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9. Epub 2008 Apr 19. (PubMed) *: joint first authors
- Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressivemultiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, Nov 11;22(22):4673-80. (PubMed)
