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Alignment results
Figure 1: Sequence alignment.
Legend:
Similar residues are colored as the most conserved one (according to BLOSUM62).
Average BLOSUM62 score: Max: 3.0 Mid: 1.5 Low: 0.5
Legend:
Similar residues are colored as the most conserved one (according to BLOSUM62).
Average BLOSUM62 score: Max: 3.0 Mid: 1.5 Low: 0.5
Input:
Outputs:
Alignment in Fasta format Alignment in Phylip format Alignment in Clustal formatTaxon names association table
| Output Taxon Name | Original (Long) Taxon Name | |
|---|---|---|
| XP_0032647 | XP_003264736.1_myoglobin_isoform_X1_[Nomascus_leucogenys] | (Clustal, HTML, PHYLIP) |
| XP_003264736.1_myoglobin_isoform_X1_[Nomascus_leucogenys] | XP_003264736.1_myoglobin_isoform_X1_[Nomascus_leucogenys] | (FASTA) |
| XP_003264736.1_myoglobin_isoform_X1_Nomascus_leucogenys | XP_003264736.1_myoglobin_isoform_X1_[Nomascus_leucogenys] | (Guide tree) |
| XP_0373711 | XP_037371121.2_myoglobin_isoform_X1_[Talpa_occidentalis] | (HTML, PHYLIP, Clustal) |
| XP_037371121.2_myoglobin_isoform_X1_[Talpa_occidentalis] | XP_037371121.2_myoglobin_isoform_X1_[Talpa_occidentalis] | (FASTA) |
| XP_037371121.2_myoglobin_isoform_X1_Talpa_occidentalis | XP_037371121.2_myoglobin_isoform_X1_[Talpa_occidentalis] | (Guide tree) |
| XP_0534396 | XP_053439601.1_myoglobin_[Nycticebus_coucang] | (HTML, PHYLIP, Clustal) |
| XP_053439601.1_myoglobin_[Nycticebus_coucang] | XP_053439601.1_myoglobin_[Nycticebus_coucang] | (FASTA) |
| XP_053439601.1_myoglobin_Nycticebus_coucang | XP_053439601.1_myoglobin_[Nycticebus_coucang] | (Guide tree) |
| XP_0635190 | XP_063519074.1_myoglobin_isoform_X1_[Pongo_pygmaeus] | (Clustal, HTML, PHYLIP) |
| XP_063519074.1_myoglobin_isoform_X1_[Pongo_pygmaeus] | XP_063519074.1_myoglobin_isoform_X1_[Pongo_pygmaeus] | (FASTA) |
| XP_063519074.1_myoglobin_isoform_X1_Pongo_pygmaeus | XP_063519074.1_myoglobin_isoform_X1_[Pongo_pygmaeus] | (Guide tree) |
| XP_0778059 | XP_077805990.1_myoglobin_isoform_X4_[Macaca_mulatta] | (PHYLIP, HTML, Clustal) |
| XP_077805990.1_myoglobin_isoform_X4_[Macaca_mulatta] | XP_077805990.1_myoglobin_isoform_X4_[Macaca_mulatta] | (FASTA) |
| XP_077805990.1_myoglobin_isoform_X4_Macaca_mulatta | XP_077805990.1_myoglobin_isoform_X4_[Macaca_mulatta] | (Guide tree) |
| XP_0809168 | XP_080916835.1_myoglobin_isoform_1_[Rhinolophus_hipposideros] | (Clustal, HTML, PHYLIP) |
| XP_080916835.1_myoglobin_isoform_1_[Rhinolophus_hipposideros] | XP_080916835.1_myoglobin_isoform_1_[Rhinolophus_hipposideros] | (FASTA) |
| XP_080916835.1_myoglobin_isoform_1_Rhinolophus_hipposideros | XP_080916835.1_myoglobin_isoform_1_[Rhinolophus_hipposideros] | (Guide tree) |
| XP_0809850 | XP_080985020.1_myoglobin_isoform_1_[Miniopterus_schreibersii] | (HTML, PHYLIP, Clustal) |
| XP_080985020.1_myoglobin_isoform_1_[Miniopterus_schreibersii] | XP_080985020.1_myoglobin_isoform_1_[Miniopterus_schreibersii] | (FASTA) |
| XP_080985020.1_myoglobin_isoform_1_Miniopterus_schreibersii | XP_080985020.1_myoglobin_isoform_1_[Miniopterus_schreibersii] | (Guide tree) |
Download taxon names association tableMultiple sequence alignment editor:
(If you expect to edit the alignment by yourself, you can consult Jalview multiple alignment editor documentation
.)Please cite:
- Dereeper A., Audic S., Claverie J.M., Blanc G. BLAST-EXPLORER helps you building datasets for phylogenetic analysis. BMC Evol Biol. 2010 Jan 12;10:8. (PubMed)
- Dereeper A.*, Guignon V.*, Blanc G., Audic S., Buffet S., Chevenet F., Dufayard J.F., Guindon S., Lefort V., Lescot M., Claverie J.M., Gascuel O. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9. Epub 2008 Apr 19. (PubMed) *: joint first authors
- Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, Mar 19;32(5):1792-7. (PubMed)
