A new version of phylogeny.fr is available: https://www.phylogeny.fr/!
| "One Click" Mode |
Alignment
MUSCLE 
Curation
Gblocks
Phylogeny
PhyML
Tree Rendering
TreeDyn |
Help  |
Curation results
Figure 1: Selected alignment blocks (underlined in blue ).
Input:
Outputs:
Cured alignment in FASTA Format Cured alignment in PHYLIP FormatConserved positions: 53%
Taxon names association table
| Output Taxon Name | Original (Long) Taxon Name | |
|---|---|---|
| AAA59172.1 | AAA59172.1_insulin_[Homo_sapiens] | (PHYLIP) |
| AAA59172.1_insu | AAA59172.1_insulin_[Homo_sapiens] | (HTML) |
| AAA59172.1_insulin_[Homo_sapiens] | AAA59172.1_insulin_[Homo_sapiens] | (FASTA) |
| AAA59172.1_insulin_Homo_sapiens | AAA59172.1_insulin_[Homo_sapiens] | (Guide tree) |
| NP_0010089 | NP_001008996.1_insulin_preproprotein_[Pan_troglodytes] | (PHYLIP) |
| NP_001008996.1 | NP_001008996.1_insulin_preproprotein_[Pan_troglodytes] | (HTML) |
| NP_001008996.1_insulin_preproprotein_[Pan_troglodytes] | NP_001008996.1_insulin_preproprotein_[Pan_troglodytes] | (FASTA) |
| NP_001008996.1_insulin_preproprotein_Pan_troglodytes | NP_001008996.1_insulin_preproprotein_[Pan_troglodytes] | (Guide tree) |
| XP_0080028 | XP_008002825.1_insulin_isoform_X2_[Chlorocebus_sabaeus] | (PHYLIP) |
| XP_008002825.1 | XP_008002825.1_insulin_isoform_X2_[Chlorocebus_sabaeus] | (HTML) |
| XP_008002825.1_insulin_isoform_X2_[Chlorocebus_sabaeus] | XP_008002825.1_insulin_isoform_X2_[Chlorocebus_sabaeus] | (FASTA) |
| XP_008002825.1_insulin_isoform_X2_Chlorocebus_sabaeus | XP_008002825.1_insulin_isoform_X2_[Chlorocebus_sabaeus] | (Guide tree) |
| XP_0117196 | XP_011719619.2_insulin_isoform_X1_[Macaca_nemestrina] | (PHYLIP) |
| XP_011719619.2 | XP_011719619.2_insulin_isoform_X1_[Macaca_nemestrina] | (HTML) |
| XP_011719619.2_insulin_isoform_X1_[Macaca_nemestrina] | XP_011719619.2_insulin_isoform_X1_[Macaca_nemestrina] | (FASTA) |
| XP_011719619.2_insulin_isoform_X1_Macaca_nemestrina | XP_011719619.2_insulin_isoform_X1_[Macaca_nemestrina] | (Guide tree) |
| XP_0347878 | XP_034787832.1_insulin_[Pan_paniscus] | (PHYLIP) |
| XP_034787832.1 | XP_034787832.1_insulin_[Pan_paniscus] | (HTML) |
| XP_034787832.1_insulin_[Pan_paniscus] | XP_034787832.1_insulin_[Pan_paniscus] | (FASTA) |
| XP_034787832.1_insulin_Pan_paniscus | XP_034787832.1_insulin_[Pan_paniscus] | (Guide tree) |
Download taxon names association tableMultiple sequence alignment editor:
(If you expect to edit the alignment by yourself, you can consult Jalview multiple alignment editor documentation
.)Please cite:
- Dereeper A., Audic S., Claverie J.M., Blanc G. BLAST-EXPLORER helps you building datasets for phylogenetic analysis. BMC Evol Biol. 2010 Jan 12;10:8. (PubMed)
- Dereeper A.*, Guignon V.*, Blanc G., Audic S., Buffet S., Chevenet F., Dufayard J.F., Guindon S., Lefort V., Lescot M., Claverie J.M., Gascuel O. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9. Epub 2008 Apr 19. (PubMed) *: joint first authors
- Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, Mar 19;32(5):1792-7. (PubMed)
- Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol. 2000, Apr;17(4):540-52. (PubMed)
