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32 candidates

Alignment
MUSCLE

Curation
Gblocks

Phylogeny
PhyML

Tree Rendering
TreeDyn

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Curation results

Figure 1: Selected alignment blocks (underlined in blue ).

Input:

Input raw alignment

Outputs:

Cured alignment in FASTA Format

Cured alignment in PHYLIP Format
Conserved positions: 57%

Taxon names association table

Table I: Taxon names association table
Output Taxon Name	Original (Long) Taxon Name

AAK22050.1	AAK22050.1:22-430_cytochrome_P450_family_protein_[Caulobacter_vibrioides_CB15]	(PHYLIP)
AAK22050.1:22-4	AAK22050.1:22-430_cytochrome_P450_family_protein_[Caulobacter_vibrioides_CB15]	(HTML)
AAK22050.1:22-430_cytochrome_P450_family_protein_[Caulobacter_vibrioides_CB15]	AAK22050.1:22-430_cytochrome_P450_family_protein_[Caulobacter_vibrioides_CB15]	(FASTA)
AAK22050.1_22-430_cytochrome_P450_family_protein_Caulobacter_vib	AAK22050.1:22-430_cytochrome_P450_family_protein_[Caulobacter_vibrioides_CB15]	(Guide tree)
AAS80270.1	AAS80270.1_P450_monooxygenase_[Alcanivorax_borkumensis_SK2]	(PHYLIP)
AAS80270.1_P450	AAS80270.1_P450_monooxygenase_[Alcanivorax_borkumensis_SK2]	(HTML)
AAS80270.1_P450_monooxygenase_[Alcanivorax_borkumensis_SK2]	AAS80270.1_P450_monooxygenase_[Alcanivorax_borkumensis_SK2]	(FASTA)
AAS80270.1_P450_monooxygenase_Alcanivorax_borkumensis_SK2	AAS80270.1_P450_monooxygenase_[Alcanivorax_borkumensis_SK2]	(Guide tree)
ABE29396.1	ABE29396.1_Putative_cytochrome_P450_[Paraburkholderia_xenovorans_LB400]	(PHYLIP)
ABE29396.1_Puta	ABE29396.1_Putative_cytochrome_P450_[Paraburkholderia_xenovorans_LB400]	(HTML)
ABE29396.1_Putative_cytochrome_P450_[Paraburkholderia_xenovorans_LB400]	ABE29396.1_Putative_cytochrome_P450_[Paraburkholderia_xenovorans_LB400]	(FASTA)
ABE29396.1_Putative_cytochrome_P450_Paraburkholderia_xenovorans	ABE29396.1_Putative_cytochrome_P450_[Paraburkholderia_xenovorans_LB400]	(Guide tree)
ACC41588.1	ACC41588.1_cytochrome_P450_153A16_Cyp153A16_[Mycobacterium_marinum_M]	(PHYLIP)
ACC41588.1_cyto	ACC41588.1_cytochrome_P450_153A16_Cyp153A16_[Mycobacterium_marinum_M]	(HTML)
ACC41588.1_cytochrome_P450_153A16_Cyp153A16_[Mycobacterium_marinum_M]	ACC41588.1_cytochrome_P450_153A16_Cyp153A16_[Mycobacterium_marinum_M]	(FASTA)
ACC41588.1_cytochrome_P450_153A16_Cyp153A16_Mycobacterium_marinu	ACC41588.1_cytochrome_P450_153A16_Cyp153A16_[Mycobacterium_marinum_M]	(Guide tree)
ACQ99381.2	ACQ99381.2_cytochrome_P450_alkane_hydroxylase_[Alcanivorax_dieselolei]	(PHYLIP)
ACQ99381.2_cyto	ACQ99381.2_cytochrome_P450_alkane_hydroxylase_[Alcanivorax_dieselolei]	(HTML)
ACQ99381.2_cytochrome_P450_alkane_hydroxylase_[Alcanivorax_dieselolei]	ACQ99381.2_cytochrome_P450_alkane_hydroxylase_[Alcanivorax_dieselolei]	(FASTA)
ACQ99381.2_cytochrome_P450_alkane_hydroxylase_Alcanivorax_diesel	ACQ99381.2_cytochrome_P450_alkane_hydroxylase_[Alcanivorax_dieselolei]	(Guide tree)
AFC48666.1	AFC48666.1_putative_Linalool_8-monooxygenase_[Mycobacterium_intracellulare_MOTT	(PHYLIP)
AFC48666.1_puta	AFC48666.1_putative_Linalool_8-monooxygenase_[Mycobacterium_intracellulare_MOTT	(HTML)
AFC48666.1_putative_Linalool_8-monooxygenase_[Mycobacterium_intracellulare_MOTT	AFC48666.1_putative_Linalool_8-monooxygenase_[Mycobacterium_intracellulare_MOTT	(FASTA)
AFC48666.1_putative_Linalool_8-monooxygenase_Mycobacterium_intra	AFC48666.1_putative_Linalool_8-monooxygenase_[Mycobacterium_intracellulare_MOTT	(Guide tree)
AFY63004.1	AFY63004.1_CYP153_[Dietzia_sp._DQ12-45-1b]	(PHYLIP)
AFY63004.1_CYP1	AFY63004.1_CYP153_[Dietzia_sp._DQ12-45-1b]	(HTML)
AFY63004.1_CYP153_[Dietzia_sp._DQ12-45-1b]	AFY63004.1_CYP153_[Dietzia_sp._DQ12-45-1b]	(FASTA)
AFY63004.1_CYP153_Dietzia_sp._DQ12-45-1b	AFY63004.1_CYP153_[Dietzia_sp._DQ12-45-1b]	(Guide tree)
AKJ87746.1	AKJ87746.1_cytochrome_450_cyclohexane_monooxygenase_[Acidovorax_sp._CHX100]	(PHYLIP)
AKJ87746.1_cyto	AKJ87746.1_cytochrome_450_cyclohexane_monooxygenase_[Acidovorax_sp._CHX100]	(HTML)
AKJ87746.1_cytochrome_450_cyclohexane_monooxygenase_[Acidovorax_sp._CHX100]	AKJ87746.1_cytochrome_450_cyclohexane_monooxygenase_[Acidovorax_sp._CHX100]	(FASTA)
AKJ87746.1_cytochrome_450_cyclohexane_monooxygenase_Acidovorax_s	AKJ87746.1_cytochrome_450_cyclohexane_monooxygenase_[Acidovorax_sp._CHX100]	(Guide tree)
ASR03252.1	ASR03252.1_Linalool_8-monooxygenase_[Gordonia_rubripertincta]	(PHYLIP)
ASR03252.1_Lina	ASR03252.1_Linalool_8-monooxygenase_[Gordonia_rubripertincta]	(HTML)
ASR03252.1_Linalool_8-monooxygenase_[Gordonia_rubripertincta]	ASR03252.1_Linalool_8-monooxygenase_[Gordonia_rubripertincta]	(FASTA)
ASR03252.1_Linalool_8-monooxygenase_Gordonia_rubripertincta	ASR03252.1_Linalool_8-monooxygenase_[Gordonia_rubripertincta]	(Guide tree)
BAE78452.1	BAE78452.1_CYP153_[Acinetobacter_sp._OC4]	(PHYLIP)
BAE78452.1_CYP1	BAE78452.1_CYP153_[Acinetobacter_sp._OC4]	(HTML)
BAE78452.1_CYP153_[Acinetobacter_sp._OC4]	BAE78452.1_CYP153_[Acinetobacter_sp._OC4]	(FASTA)
BAE78452.1_CYP153_Acinetobacter_sp._OC4	BAE78452.1_CYP153_[Acinetobacter_sp._OC4]	(Guide tree)
CAH04396.1	CAH04396.1_cytochrome_P450_alkane_hydroxylase_[Mycobacterium_sp._HXN-1500]	(PHYLIP)
CAH04396.1_cyto	CAH04396.1_cytochrome_P450_alkane_hydroxylase_[Mycobacterium_sp._HXN-1500]	(HTML)
CAH04396.1_cytochrome_P450_alkane_hydroxylase_[Mycobacterium_sp._HXN-1500]	CAH04396.1_cytochrome_P450_alkane_hydroxylase_[Mycobacterium_sp._HXN-1500]	(FASTA)
CAH04396.1_cytochrome_P450_alkane_hydroxylase_Mycobacterium_sp.	CAH04396.1_cytochrome_P450_alkane_hydroxylase_[Mycobacterium_sp._HXN-1500]	(Guide tree)
CAH59968.1	CAH59968.1_cytochrome_P450_alkane_hydroxylase_[Alcanivorax_borkumensis_AP1]	(PHYLIP)
CAH59968.1_cyto	CAH59968.1_cytochrome_P450_alkane_hydroxylase_[Alcanivorax_borkumensis_AP1]	(HTML)
CAH59968.1_cytochrome_P450_alkane_hydroxylase_[Alcanivorax_borkumensis_AP1]	CAH59968.1_cytochrome_P450_alkane_hydroxylase_[Alcanivorax_borkumensis_AP1]	(FASTA)
CAH59968.1_cytochrome_P450_alkane_hydroxylase_Alcanivorax_borkum	CAH59968.1_cytochrome_P450_alkane_hydroxylase_[Alcanivorax_borkumensis_AP1]	(Guide tree)
CAH61448.1	CAH61448.1_cytochrome_P450_alkane_hydroxylase_1_CYP153A7_[Sphingopyxis_macrogol	(PHYLIP)
CAH61448.1_cyto	CAH61448.1_cytochrome_P450_alkane_hydroxylase_1_CYP153A7_[Sphingopyxis_macrogol	(HTML)
CAH61448.1_cytochrome_P450_alkane_hydroxylase_1_CYP153A7_[Sphingopyxis_macrogol	CAH61448.1_cytochrome_P450_alkane_hydroxylase_1_CYP153A7_[Sphingopyxis_macrogol	(FASTA)
CAH61448.1_cytochrome_P450_alkane_hydroxylase_1_CYP153A7_Sphingo	CAH61448.1_cytochrome_P450_alkane_hydroxylase_1_CYP153A7_[Sphingopyxis_macrogol	(Guide tree)
CAH61449.1	CAH61449.1_putative_alkane_1-monooxygenase_CYP153D3_[Sphingopyxis_macrogoltabid	(PHYLIP)
CAH61449.1_puta	CAH61449.1_putative_alkane_1-monooxygenase_CYP153D3_[Sphingopyxis_macrogoltabid	(HTML)
CAH61449.1_putative_alkane_1-monooxygenase_CYP153D3_[Sphingopyxis_macrogoltabid	CAH61449.1_putative_alkane_1-monooxygenase_CYP153D3_[Sphingopyxis_macrogoltabid	(FASTA)
CAH61449.1_putative_alkane_1-monooxygenase_CYP153D3_Sphingopyxis	CAH61449.1_putative_alkane_1-monooxygenase_CYP153D3_[Sphingopyxis_macrogoltabid	(Guide tree)
CAH61451.1	CAH61451.1_putative_cytochrome_P450_alkane_hydroxylase_CYP153A8_[Sphingopyxis_m	(PHYLIP)
CAH61451.1_puta	CAH61451.1_putative_cytochrome_P450_alkane_hydroxylase_CYP153A8_[Sphingopyxis_m	(HTML)
CAH61451.1_putative_cytochrome_P450_alkane_hydroxylase_CYP153A8	CAH61451.1_putative_cytochrome_P450_alkane_hydroxylase_CYP153A8_[Sphingopyxis_m	(Guide tree)
CAH61451.1_putative_cytochrome_P450_alkane_hydroxylase_CYP153A8_[Sphingopyxis_m	CAH61451.1_putative_cytochrome_P450_alkane_hydroxylase_CYP153A8_[Sphingopyxis_m	(FASTA)
CAH61454.1	CAH61454.1_putative_cytochrome_P450_alkane_hydroxylase_CYP153A11_[Sphingopyxis	(PHYLIP)
CAH61454.1_puta	CAH61454.1_putative_cytochrome_P450_alkane_hydroxylase_CYP153A11_[Sphingopyxis	(HTML)
CAH61454.1_putative_cytochrome_P450_alkane_hydroxylase_CYP153A11	CAH61454.1_putative_cytochrome_P450_alkane_hydroxylase_CYP153A11_[Sphingopyxis	(Guide tree)
CAH61454.1_putative_cytochrome_P450_alkane_hydroxylase_CYP153A11_[Sphingopyxis	CAH61454.1_putative_cytochrome_P450_alkane_hydroxylase_CYP153A11_[Sphingopyxis	(FASTA)
CAH61456.1	CAH61456.1_putative_cytochrome_P450_alkane_hydroxylase_CYP153D2_[Sphingopyxis_m	(PHYLIP)
CAH61456.1_puta	CAH61456.1_putative_cytochrome_P450_alkane_hydroxylase_CYP153D2_[Sphingopyxis_m	(HTML)
CAH61456.1_putative_cytochrome_P450_alkane_hydroxylase_CYP153D2	CAH61456.1_putative_cytochrome_P450_alkane_hydroxylase_CYP153D2_[Sphingopyxis_m	(Guide tree)
CAH61456.1_putative_cytochrome_P450_alkane_hydroxylase_CYP153D2_[Sphingopyxis_m	CAH61456.1_putative_cytochrome_P450_alkane_hydroxylase_CYP153D2_[Sphingopyxis_m	(FASTA)
pdb_5FYF_A_Chain_A_CYTOCHROME_P450_Marinobacter_nauticus	pdb\|5FYF\|A_Chain_A,_CYTOCHROME_P450_[Marinobacter_nauticus]	(Guide tree)
pdb_5H1Z_A_Chain_A_putative_CYP_alkane_hydroxylase_CYP153D17_Sph	pdb\|5H1Z\|A_Chain_A,_putative_CYP_alkane_hydroxylase_CYP153D17_[Sphingomonas_sp.	(Guide tree)
pdb_6HQD_A_Chain_A_Cytochrome_P450_Pseudomonas_sp._19-rlim	pdb\|6HQD\|A_Chain_A,_Cytochrome_P450_[Pseudomonas_sp._19-rlim]	(Guide tree)
pdb\|5FYF\|A	pdb\|5FYF\|A_Chain_A,_CYTOCHROME_P450_[Marinobacter_nauticus]	(PHYLIP)
pdb\|5FYF\|A_Chai	pdb\|5FYF\|A_Chain_A,_CYTOCHROME_P450_[Marinobacter_nauticus]	(HTML)
pdb\|5FYF\|A_Chain_A,_CYTOCHROME_P450_[Marinobacter_nauticus]	pdb\|5FYF\|A_Chain_A,_CYTOCHROME_P450_[Marinobacter_nauticus]	(FASTA)
pdb\|5H1Z\|A	pdb\|5H1Z\|A_Chain_A,_putative_CYP_alkane_hydroxylase_CYP153D17_[Sphingomonas_sp.	(PHYLIP)
pdb\|5H1Z\|A_Chai	pdb\|5H1Z\|A_Chain_A,_putative_CYP_alkane_hydroxylase_CYP153D17_[Sphingomonas_sp.	(HTML)
pdb\|5H1Z\|A_Chain_A,_putative_CYP_alkane_hydroxylase_CYP153D17_[Sphingomonas_sp.	pdb\|5H1Z\|A_Chain_A,_putative_CYP_alkane_hydroxylase_CYP153D17_[Sphingomonas_sp.	(FASTA)
pdb\|6HQD\|A	pdb\|6HQD\|A_Chain_A,_Cytochrome_P450_[Pseudomonas_sp._19-rlim]	(PHYLIP)
pdb\|6HQD\|A_Chai	pdb\|6HQD\|A_Chain_A,_Cytochrome_P450_[Pseudomonas_sp._19-rlim]	(HTML)
pdb\|6HQD\|A_Chain_A,_Cytochrome_P450_[Pseudomonas_sp._19-rlim]	pdb\|6HQD\|A_Chain_A,_Cytochrome_P450_[Pseudomonas_sp._19-rlim]	(FASTA)
WP_0082472	WP_008247244.1_MULTISPECIES:_cytochrome_P450_[Limnobacter_sp._MED105]	(PHYLIP)
WP_008247244.1	WP_008247244.1_MULTISPECIES:_cytochrome_P450_[Limnobacter_sp._MED105]	(HTML)
WP_008247244.1_MULTISPECIES:_cytochrome_P450_[Limnobacter_sp._MED105]	WP_008247244.1_MULTISPECIES:_cytochrome_P450_[Limnobacter_sp._MED105]	(FASTA)
WP_008247244.1_MULTISPECIES_cytochrome_P450_Limnobacter_sp._MED1	WP_008247244.1_MULTISPECIES:_cytochrome_P450_[Limnobacter_sp._MED105]	(Guide tree)
WP_0109248	WP_010924803.1_cytochrome_P450_[Acinetobacter_sp._EB104]	(PHYLIP)
WP_010924803.1	WP_010924803.1_cytochrome_P450_[Acinetobacter_sp._EB104]	(HTML)
WP_010924803.1_cytochrome_P450_[Acinetobacter_sp._EB104]	WP_010924803.1_cytochrome_P450_[Acinetobacter_sp._EB104]	(FASTA)
WP_010924803.1_cytochrome_P450_Acinetobacter_sp._EB104	WP_010924803.1_cytochrome_P450_[Acinetobacter_sp._EB104]	(Guide tree)
WP_0111571	WP_011157172.1_cytochrome_P450_[Rhodopseudomonas_palustris]	(PHYLIP)
WP_011157172.1	WP_011157172.1_cytochrome_P450_[Rhodopseudomonas_palustris]	(HTML)
WP_011157172.1_cytochrome_P450_[Rhodopseudomonas_palustris]	WP_011157172.1_cytochrome_P450_[Rhodopseudomonas_palustris]	(FASTA)
WP_011157172.1_cytochrome_P450_Rhodopseudomonas_palustris	WP_011157172.1_cytochrome_P450_[Rhodopseudomonas_palustris]	(Guide tree)
WP_0114438	WP_011443882.1_cytochrome_P450_[Novosphingobium_aromaticivorans]	(PHYLIP)
WP_011443882.1	WP_011443882.1_cytochrome_P450_[Novosphingobium_aromaticivorans]	(HTML)
WP_011443882.1_cytochrome_P450_[Novosphingobium_aromaticivorans]	WP_011443882.1_cytochrome_P450_[Novosphingobium_aromaticivorans]	(FASTA)
WP_011443882.1_cytochrome_P450_Novosphingobium_aromaticivorans	WP_011443882.1_cytochrome_P450_[Novosphingobium_aromaticivorans]	(Guide tree)
WP_0114454	WP_011445471.1_cytochrome_P450_[Novosphingobium_aromaticivorans]	(PHYLIP)
WP_011445471.1	WP_011445471.1_cytochrome_P450_[Novosphingobium_aromaticivorans]	(HTML)
WP_011445471.1_cytochrome_P450_[Novosphingobium_aromaticivorans]	WP_011445471.1_cytochrome_P450_[Novosphingobium_aromaticivorans]	(FASTA)
WP_011445471.1_cytochrome_P450_Novosphingobium_aromaticivorans	WP_011445471.1_cytochrome_P450_[Novosphingobium_aromaticivorans]	(Guide tree)
WP_0114861	WP_011486139.1_cytochrome_P450_[Polaromonas_sp._JS666]	(PHYLIP)
WP_011486139.1	WP_011486139.1_cytochrome_P450_[Polaromonas_sp._JS666]	(HTML)
WP_011486139.1_cytochrome_P450_[Polaromonas_sp._JS666]	WP_011486139.1_cytochrome_P450_[Polaromonas_sp._JS666]	(FASTA)
WP_011486139.1_cytochrome_P450_Polaromonas_sp._JS666	WP_011486139.1_cytochrome_P450_[Polaromonas_sp._JS666]	(Guide tree)
WP_0119949	WP_011994939.1_cytochrome_P450_[Parvibaculum_lavamentivorans]	(PHYLIP)
WP_011994939.1	WP_011994939.1_cytochrome_P450_[Parvibaculum_lavamentivorans]	(HTML)
WP_011994939.1_cytochrome_P450_[Parvibaculum_lavamentivorans]	WP_011994939.1_cytochrome_P450_[Parvibaculum_lavamentivorans]	(FASTA)
WP_011994939.1_cytochrome_P450_Parvibaculum_lavamentivorans	WP_011994939.1_cytochrome_P450_[Parvibaculum_lavamentivorans]	(Guide tree)
WP_0125213	WP_012521375.1_cytochrome_P450_[Phenylobacterium_zucineum]	(PHYLIP)
WP_012521375.1	WP_012521375.1_cytochrome_P450_[Phenylobacterium_zucineum]	(HTML)
WP_012521375.1_cytochrome_P450_[Phenylobacterium_zucineum]	WP_012521375.1_cytochrome_P450_[Phenylobacterium_zucineum]	(FASTA)
WP_012521375.1_cytochrome_P450_Phenylobacterium_zucineum	WP_012521375.1_cytochrome_P450_[Phenylobacterium_zucineum]	(Guide tree)
WP_0145794	WP_014579434.1_cytochrome_P450_[Marinobacter_adhaerens]	(PHYLIP)
WP_014579434.1	WP_014579434.1_cytochrome_P450_[Marinobacter_adhaerens]	(HTML)
WP_014579434.1_cytochrome_P450_[Marinobacter_adhaerens]	WP_014579434.1_cytochrome_P450_[Marinobacter_adhaerens]	(FASTA)
WP_014579434.1_cytochrome_P450_Marinobacter_adhaerens	WP_014579434.1_cytochrome_P450_[Marinobacter_adhaerens]	(Guide tree)
WP_0331123	WP_033112350.1_solanimycin_biosynthesis_cytochrome_P450_SolI_[Dickeya_dadantii]	(PHYLIP)
WP_033112350.1	WP_033112350.1_solanimycin_biosynthesis_cytochrome_P450_SolI_[Dickeya_dadantii]	(HTML)
WP_033112350.1_solanimycin_biosynthesis_cytochrome_P450_SolI_[Dickeya_dadantii]	WP_033112350.1_solanimycin_biosynthesis_cytochrome_P450_SolI_[Dickeya_dadantii]	(FASTA)
WP_033112350.1_solanimycin_biosynthesis_cytochrome_P450_SolI_Dic	WP_033112350.1_solanimycin_biosynthesis_cytochrome_P450_SolI_[Dickeya_dadantii]	(Guide tree)
WP_2799409	WP_279940947.1_cytochrome_P450_[Gordonia_alkanivorans]	(PHYLIP)
WP_279940947.1	WP_279940947.1_cytochrome_P450_[Gordonia_alkanivorans]	(HTML)
WP_279940947.1_cytochrome_P450_[Gordonia_alkanivorans]	WP_279940947.1_cytochrome_P450_[Gordonia_alkanivorans]	(FASTA)
WP_279940947.1_cytochrome_P450_Gordonia_alkanivorans	WP_279940947.1_cytochrome_P450_[Gordonia_alkanivorans]	(Guide tree)
WP_3783849	WP_378384988.1_cytochrome_P450_[Rhodopseudomonas_telluris]	(PHYLIP)
WP_378384988.1	WP_378384988.1_cytochrome_P450_[Rhodopseudomonas_telluris]	(HTML)
WP_378384988.1_cytochrome_P450_[Rhodopseudomonas_telluris]	WP_378384988.1_cytochrome_P450_[Rhodopseudomonas_telluris]	(FASTA)
WP_378384988.1_cytochrome_P450_Rhodopseudomonas_telluris	WP_378384988.1_cytochrome_P450_[Rhodopseudomonas_telluris]	(Guide tree)

Download taxon names association table

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Please cite:

Dereeper A., Audic S., Claverie J.M., Blanc G. BLAST-EXPLORER helps you building datasets for phylogenetic analysis. BMC Evol Biol. 2010 Jan 12;10:8. (PubMed)
Dereeper A.*, Guignon V.*, Blanc G., Audic S., Buffet S., Chevenet F., Dufayard J.F., Guindon S., Lefort V., Lescot M., Claverie J.M., Gascuel O. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9. Epub 2008 Apr 19. (PubMed) *: joint first authors
Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, Mar 19;32(5):1792-7. (PubMed)
Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol. 2000, Apr;17(4):540-52. (PubMed)

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