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Curation results
Figure 1: Selected alignment blocks (underlined in blue ).
Input:
Outputs:
Cured alignment in FASTA Format Cured alignment in PHYLIP FormatConserved positions: 90%
Taxon names association table
| Output Taxon Name | Original (Long) Taxon Name | |
|---|---|---|
| Bacillus | Bacillus | (PHYLIP, Guide tree, FASTA, HTML) |
| n1 | n1 | (Guide tree, PHYLIP, FASTA, HTML) |
| n10 | n10 | (FASTA, Guide tree, PHYLIP, HTML) |
| n11 | n11 | (HTML, PHYLIP, Guide tree, FASTA) |
| n12 | n12 | (Guide tree, PHYLIP, FASTA, HTML) |
| n13 | n13 | (Guide tree, PHYLIP, FASTA, HTML) |
| n14 | n14 | (PHYLIP, Guide tree, FASTA, HTML) |
| n15 | n15 | (HTML, PHYLIP, Guide tree, FASTA) |
| n16 | n16 | (HTML, FASTA, PHYLIP, Guide tree) |
| n17 | n17 | (FASTA, Guide tree, PHYLIP, HTML) |
| n18 | n18 | (Guide tree, PHYLIP, FASTA, HTML) |
| n19 | n19 | (HTML, FASTA, PHYLIP, Guide tree) |
| n2 | n2 | (HTML, Guide tree, PHYLIP, FASTA) |
| n20 | n20 | (HTML, FASTA, Guide tree, PHYLIP) |
| n21 | n21 | (HTML, Guide tree, PHYLIP, FASTA) |
| n22 | n22 | (FASTA, PHYLIP, Guide tree, HTML) |
| n23 | n23 | (FASTA, Guide tree, PHYLIP, HTML) |
| n24 | n24 | (PHYLIP, Guide tree, FASTA, HTML) |
| n25 | n25 | (FASTA, PHYLIP, Guide tree, HTML) |
| n26 | n26 | (HTML, FASTA, Guide tree, PHYLIP) |
| n27 | n27 | (HTML, FASTA, Guide tree, PHYLIP) |
| n28 | n28 | (HTML, Guide tree, PHYLIP, FASTA) |
| n29 | n29 | (Guide tree, PHYLIP, FASTA, HTML) |
| n3 | n3 | (FASTA, PHYLIP, Guide tree, HTML) |
| n4 | n4 | (HTML, Guide tree, PHYLIP, FASTA) |
| n5 | n5 | (HTML, FASTA, Guide tree, PHYLIP) |
| n6 | n6 | (FASTA, PHYLIP, Guide tree, HTML) |
| n7 | n7 | (FASTA, PHYLIP, Guide tree, HTML) |
| n8 | n8 | (HTML, FASTA, Guide tree, PHYLIP) |
| n9 | n9 | (HTML, FASTA, Guide tree, PHYLIP) |
Download taxon names association tableMultiple sequence alignment editor:
(If you expect to edit the alignment by yourself, you can consult Jalview multiple alignment editor documentation
.)Please cite:
- Dereeper A., Audic S., Claverie J.M., Blanc G. BLAST-EXPLORER helps you building datasets for phylogenetic analysis. BMC Evol Biol. 2010 Jan 12;10:8. (PubMed)
- Dereeper A.*, Guignon V.*, Blanc G., Audic S., Buffet S., Chevenet F., Dufayard J.F., Guindon S., Lefort V., Lescot M., Claverie J.M., Gascuel O. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9. Epub 2008 Apr 19. (PubMed) *: joint first authors
- Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, Mar 19;32(5):1792-7. (PubMed)
- Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol. 2000, Apr;17(4):540-52. (PubMed)
