A new version of phylogeny.fr is available: https://www.phylogeny.fr/!
| "One Click" Mode |
Alignment
MUSCLE 
Curation
Gblocks
Phylogeny
PhyML
Tree Rendering
TreeDyn |
Help  |
Phylogeny results
Figure 1: Phylogenetic tree.
Input:
Outputs:
Tree in Newick format (automatically recognized by MEGA if installed) Statistics fileSubstitution model: HKY85
Gamma shape parameter: 0.803
Transition/transversion ratio: 4.032
Number of categories: 4
Proportion of invariant: 0.946
Taxon names association table
| Output Taxon Name | Original (Long) Taxon Name | |
|---|---|---|
| Bacillus | Bacillus | (Newick) |
| n1 | n1 | (Newick) |
| n10 | n10 | (Newick) |
| n11 | n11 | (Newick) |
| n12 | n12 | (Newick) |
| n13 | n13 | (Newick) |
| n14 | n14 | (Newick) |
| n15 | n15 | (Newick) |
| n16 | n16 | (Newick) |
| n17 | n17 | (Newick) |
| n18 | n18 | (Newick) |
| n19 | n19 | (Newick) |
| n2 | n2 | (Newick) |
| n20 | n20 | (Newick) |
| n21 | n21 | (Newick) |
| n22 | n22 | (Newick) |
| n23 | n23 | (Newick) |
| n24 | n24 | (Newick) |
| n25 | n25 | (Newick) |
| n26 | n26 | (Newick) |
| n27 | n27 | (Newick) |
| n28 | n28 | (Newick) |
| n29 | n29 | (Newick) |
| n3 | n3 | (Newick) |
| n4 | n4 | (Newick) |
| n5 | n5 | (Newick) |
| n6 | n6 | (Newick) |
| n7 | n7 | (Newick) |
| n8 | n8 | (Newick) |
| n9 | n9 | (Newick) |
Download taxon names association tableTree viewer:
(requires Java 1.6 or above)
Please cite:
- Dereeper A., Audic S., Claverie J.M., Blanc G. BLAST-EXPLORER helps you building datasets for phylogenetic analysis. BMC Evol Biol. 2010 Jan 12;10:8. (PubMed)
- Dereeper A.*, Guignon V.*, Blanc G., Audic S., Buffet S., Chevenet F., Dufayard J.F., Guindon S., Lefort V., Lescot M., Claverie J.M., Gascuel O. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9. Epub 2008 Apr 19. (PubMed) *: joint first authors
- Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, Mar 19;32(5):1792-7. (PubMed)
- Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol. 2000, Apr;17(4):540-52. (PubMed)
- Guindon S., Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol. 2003, Oct;52(5):696-704. (PubMed)
- Anisimova M., Gascuel O. Approximate likelihood ratio test for branchs: A fast, accurate and powerful alternative. Syst Biol. 2006, Aug;55(4):539-52. (PubMed)
